Cell targets

Cell targets are biochemical variables (fluxes or concentrations) that need to remain below or above a certain threshold value to ensure a viable cell. They define constraints in the RBA model.

ID TargetGroup TargetType TargetEntity TargetParameter
Target_concentration_average_protein_Secreted translation_targets concentrations average_protein_Secreted nonenzymatic_proteins_Secreted
Target_concentration_average_protein_Cell_membrane translation_targets concentrations average_protein_Cell_membrane nonenzymatic_proteins_Cell_membrane
Target_concentration_average_protein_Cytoplasm translation_targets concentrations average_protein_Cytoplasm nonenzymatic_proteins_Cytoplasm
Target_concentration_mrna transcription_targets concentrations mrna mrna_concentration
Target_production_mrna transcription_targets production_fluxes mrna mrna_degradation_flux
Target_concentration_dna replication_targets concentrations dna dna_concentration
Target_degradation_mrna rna_degradation degradation_fluxes mrna mrna_degradation_flux
Target_concentration_M_trna2_c metabolite_production concentrations M_trna2_c TRNATHR_concentration
Target_concentration_M_atp_c metabolite_production concentrations M_atp_c ATP_concentration
Target_concentration_M_trna_c metabolite_production concentrations M_trna_c TRNAASP_concentration
Target_concentration_M_nad_c metabolite_production concentrations M_nad_c NAD_concentration
Target_concentration_M_nadph_c metabolite_production concentrations M_nadph_c NADPH_concentration
Target_concentration_M_gtp_c metabolite_production concentrations M_gtp_c GTP_concentration
Target_concentration_M_pp_c metabolite_production concentrations M_pp_c PPi_concentration
Target_concentration_M_sprm_c metabolite_production concentrations M_sprm_c SPMD_concentration
Target_concentration_M_nadp_c metabolite_production concentrations M_nadp_c NADP_concentration
Target_concentration_M_ctp_c metabolite_production concentrations M_ctp_c CTP_concentration
Target_concentration_M_amp_c metabolite_production concentrations M_amp_c AMP_concentration
Target_concentration_M_gmp_c metabolite_production concentrations M_gmp_c GMP_concentration
Target_concentration_M_k_c metabolite_production concentrations M_k_c K_concentration
Target_concentration_M_gdp_c metabolite_production concentrations M_gdp_c GDP_concentration
Target_concentration_M_coa_c metabolite_production concentrations M_coa_c COA_concentration
Target_concentration_M_cmp_c metabolite_production concentrations M_cmp_c CMP_concentration
Target_concentration_M_cdp_c metabolite_production concentrations M_cdp_c CDP_concentration
Target_concentration_M_adp_c metabolite_production concentrations M_adp_c ADP_concentration
Target_concentration_M_fthf_c metabolite_production concentrations M_fthf_c 10FTHF_concentration
Target_concentration_M_p_c metabolite_production concentrations M_p_c Pi_concentration
Target_concentration_M_mmq_c macrocomponent_production concentrations M_mmq_c M_mmq_c_concentration
Target_concentration_M_pe_c macrocomponent_production concentrations M_pe_c M_pe_c_concentration
Target_concentration_M_pgout_c macrocomponent_production concentrations M_pgout_c M_pgout_c_concentration
Target_concentration_M_put_c macrocomponent_production concentrations M_put_c M_put_c_concentration
Target_concentration_M_wtaout_c macrocomponent_production concentrations M_wtaout_c M_wtaout_c_concentration
Target_concentration_M_cl_c macrocomponent_production concentrations M_cl_c M_cl_c_concentration
Target_concentration_M_lyspg_c macrocomponent_production concentrations M_lyspg_c M_lyspg_c_concentration
Target_concentration_M_3gdg_c macrocomponent_production concentrations M_3gdg_c M_3gdg_c_concentration
Target_concentration_M_pgo_c macrocomponent_production concentrations M_pgo_c M_pgo_c_concentration
Target_concentration_M_2gdg_c macrocomponent_production concentrations M_2gdg_c M_2gdg_c_concentration
Target_concentration_M_1gdg_c macrocomponent_production concentrations M_1gdg_c M_1gdg_c_concentration
Target_flux_R_maintenance_atp maintenance_atp_target reaction_fluxes R_maintenance_atp None
Target_flux_Th flagella_activation reaction_fluxes Th flagella_proton_flux