Macromolecular processes

Macromolecular machines catalyse the processes that produce, modify, and degrade macromolecules. They are associated with machine capacity constraints.

ID Name MachineSubunits ProcessComponents InitiationCofactors
P_TA Translation
P46899: 1, P26908: 1, P70974: 1, P42060: 1, P12877: 1, P04969: 1, P81101: 1, P21465: 1, rrnO-5S: 1, O31742: 1, P05657: 1, P20278: 1, P42921: 1, P21473: 1, P21475: 1, P20458: 0, P55872: 0, P21469: 1, P55874: 1, P55873: 1, O34687: 1, Q06796: 1, P49778: 0, P21478: 1, P42924: 1, P28367: 0, P02394: 4, P21472: 1, P42923: 1, P12873: 1, P45872: 0, P37437: 1, O34967: 1, P12875: 1, P14577: 1, rrnO-23S: 1, P37807: 1, Q03223: 1, Q06798: 1, P42919: 1, P33166: 5, P21477: 1, P05647: 1, P80700: 0, P20277: 1, P21467: 1, P21476: 1, P46898: 1, P21466: 1, P12878: 1, P21464: 1, P19947: 1, P21470: 1, P37949: 0, P20282: 1, P17889: 0, P21471: 1, P21474: 1, P21468: 1, P19946: 1, P12874: 1, Q06797: 1, P0CI78: 1, rrnO-16S: 1, P80868: 0, P42920: 1, P12879: 1, M_gtp_c: 2, M_h2o_c: 2
A: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tala_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, C: {Products: {M_trna2_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tcys_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, D: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tasp_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, E: {Products: {M_trna2_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tglu_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, F: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tphe_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, G: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tgly_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, H: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_this_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, I: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tile_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, K: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tlys_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, L: {Products: {M_trna2_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tleu_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, M: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tmet_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, N: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tasn_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, P: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tpro_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, Q: {Products: {M_trna2_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tgln_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, R: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_targ_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, S: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tser_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, T: {Products: {M_trna2_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tthr_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, V: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_tval_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, W: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_ttrp_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, Y: {Products: {M_trna_c: 1.0, M_gdp_c: 2.0, M_p_c: 2.0, M_h_c: 2.0}, Reactants: {M_ttyr_c: 1.0, M_gtp_c: 2.0, M_h2o_c: 2.0}, Cost: 1.0}, CHEBI:18420: {Products: {}, Reactants: {M_mg2_c: 1.0}, Cost: 0.0}, CHEBI:597326: {Products: {}, Reactants: {M_py5p_c: 1.0}, Cost: 0.0}, CHEBI:15361: {Products: {}, Reactants: {M_pyr_c: 1.0}, Cost: 0.0}, CHEBI:29035: {Products: {}, Reactants: {M_mn2_c: 1.0}, Cost: 0.0}, CHEBI:57692: {Products: {}, Reactants: {M_fad_c: 1.0}, Cost: 0.0}, CHEBI:58210: {Products: {}, Reactants: {M_fmn_c: 1.0}, Cost: 0.0}, CHEBI:57783: {Products: {}, Reactants: {M_nadph_c: 1.0}, Cost: 0.0}, CHEBI:49883: {Products: {}, Reactants: {M_fe2_c: 1.0}, Cost: 0.0}, CHEBI:60052: {Products: {}, Reactants: {M_sheme_c: 1.0}, Cost: 0.0}, CHEBI:58937: {Products: {}, Reactants: {M_tpp_c: 1.0}, Cost: 0.0}, CHEBI:60342: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:49601: {Products: {}, Reactants: {M_fe2_c: 1.0}, Cost: 0.0}, CHEBI:29103: {Products: {}, Reactants: {M_k_c: 1.0}, Cost: 0.0}, CHEBI:29105: {Products: {}, Reactants: {M_zn2_c: 1.0}, Cost: 0.0}, CHEBI:60539: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:83088: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:28938: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:71302: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:29033: {Products: {}, Reactants: {M_fe2_c: 1.0}, Cost: 0.0}, CHEBI:60344: {Products: {}, Reactants: {M_hemeb_c: 1.0}, Cost: 0.0}, CHEBI:62814: {Products: {}, Reactants: {M_hemed_c: 1.0}, Cost: 0.0}, CHEBI:17544: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:29108: {Products: {}, Reactants: {M_ca2_c: 1.0}, Cost: 0.0}, CHEBI:21137: {Products: {}, Reactants: {M_fe2_c: 1.0}, Cost: 0.0}, CHEBI:29036: {Products: {}, Reactants: {M_cu2_c: 1.0}, Cost: 0.0}, CHEBI:30413: {Products: {}, Reactants: {M_hemeb_c: 1.0}, Cost: 0.0}, CHEBI:48828: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:60240: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:57540: {Products: {}, Reactants: {M_nad_c: 1.0}, Cost: 0.0}, CHEBI:24875: {Products: {}, Reactants: {M_fe2_c: 1.0}, Cost: 0.0}, CHEBI:47942: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:57586: {Products: {}, Reactants: {M_bio_c: 1.0}, Cost: 0.0}, CHEBI:25516: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:57925: {Products: {}, Reactants: {}, Cost: 0.0}, CHEBI:60532: {Products: {}, Reactants: {M_hemea_c: 1.0}, Cost: 0.0}, CHEBI:57618: {Products: {}, Reactants: {M_fmn_c: 1.0}, Cost: 0.0}, CHEBI:49786: {Products: {}, Reactants: {}, Cost: 0.0}
1 M_tfmet_c 1 M_gtp_c 2 M_h2o_c --> 1 M_trna_c 1 M_fmet_c 1 M_gdp_c 1 M_p_c 1 M_h_c
P_CHP Folding P28598: 14, P28599: 7, P80698: 1, P17820: 1, P17631: 2, P15874: 2
A: {Products: {}, Reactants: {}, Cost: 0.1}, C: {Products: {}, Reactants: {}, Cost: 0.1}, D: {Products: {}, Reactants: {}, Cost: 0.1}, E: {Products: {}, Reactants: {}, Cost: 0.1}, F: {Products: {}, Reactants: {}, Cost: 0.1}, G: {Products: {}, Reactants: {}, Cost: 0.1}, H: {Products: {}, Reactants: {}, Cost: 0.1}, I: {Products: {}, Reactants: {}, Cost: 0.1}, K: {Products: {}, Reactants: {}, Cost: 0.1}, L: {Products: {}, Reactants: {}, Cost: 0.1}, M: {Products: {}, Reactants: {}, Cost: 0.1}, N: {Products: {}, Reactants: {}, Cost: 0.1}, P: {Products: {}, Reactants: {}, Cost: 0.1}, Q: {Products: {}, Reactants: {}, Cost: 0.1}, R: {Products: {}, Reactants: {}, Cost: 0.1}, S: {Products: {}, Reactants: {}, Cost: 0.1}, T: {Products: {}, Reactants: {}, Cost: 0.1}, V: {Products: {}, Reactants: {}, Cost: 0.1}, W: {Products: {}, Reactants: {}, Cost: 0.1}, Y: {Products: {}, Reactants: {}, Cost: 0.1}
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P_TSC Transcription
A: {Products: {M_pp_c: 1.0, M_h_c: 1.0}, Reactants: {M_atp_c: 1.0, M_h2o_c: 1.0}, Cost: 0.0}, C: {Products: {M_pp_c: 1.0, M_h_c: 1.0}, Reactants: {M_ctp_c: 1.0, M_h2o_c: 1.0}, Cost: 0.0}, G: {Products: {M_pp_c: 1.0, M_h_c: 1.0}, Reactants: {M_gtp_c: 1.0, M_h2o_c: 1.0}, Cost: 0.0}, U: {Products: {M_pp_c: 1.0, M_h_c: 1.0}, Reactants: {M_utp_c: 1.0, M_h2o_c: 1.0}, Cost: 0.0}
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P_REP Replication
A: {Products: {M_pp_c: 1.0, M_h_c: 1.0}, Reactants: {M_datp_c: 1.0, M_h2o_c: 1.0}, Cost: 0.0}, C: {Products: {M_pp_c: 1.0, M_h_c: 1.0}, Reactants: {M_dctp_c: 1.0, M_h2o_c: 1.0}, Cost: 0.0}, G: {Products: {M_pp_c: 1.0, M_h_c: 1.0}, Reactants: {M_dgtp_c: 1.0, M_h2o_c: 1.0}, Cost: 0.0}, T: {Products: {M_pp_c: 1.0, M_h_c: 1.0}, Reactants: {M_dttp_c: 1.0, M_h2o_c: 1.0}, Cost: 0.0}
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P_RNADEG RNA degradation
A: {Products: {M_amp_c: 1.0, M_h_c: 1.0}, Reactants: {M_h2o_c: 1.0}, Cost: 0.0}, C: {Products: {M_cmp_c: 1.0, M_h_c: 1.0}, Reactants: {M_h2o_c: 1.0}, Cost: 0.0}, G: {Products: {M_gmp_c: 1.0, M_h_c: 1.0}, Reactants: {M_h2o_c: 1.0}, Cost: 0.0}, U: {Products: {M_ump_c: 1.0, M_h_c: 1.0}, Reactants: {M_h2o_c: 1.0}, Cost: 0.0}
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test_process_1 Test process undefined