Ecoli K12wt RBAmodel
Model
Model overview
Model size
Cell structure
Cell compartments
Cell modules
Metabolism
Metabolites
Reactions
Enzymes
Macromolecules
Macromolecular processes
Proteins
Other macromolecules
Constraints
Metabolite Constraints
Enzyme Constraints
Machinery Constraints
Density Constraints
Cell Targets
Parameters
Growth medium composition
Enzyme forward capacities
Enzyme backward capacities
Machine capacities
Compartment capacities
Target values
Simulation
Optimality problem
Linear objective
Reaction fluxes
Enzyme concentrations
Machine concentrations
Protein concentrations
Metabolite dual values
Enzyme dual values
Machine dual values
Density dual values
HowTo
Target values
Values of cellular targets, at given growth-rate and medium.
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ElementID
run1
run2
run3
Target_concentration_average_protein_Cell_inner_membrane
0.0003
0.0003
0.0003
Target_concentration_average_protein_Cytoplasm
0.00199
0.00199
0.00199
Target_concentration_average_protein_Cell_outer_membrane
2e-05
2e-05
2e-05
Target_concentration_average_protein_Periplasm
7e-05
7e-05
7e-05
Target_concentration_average_protein_Secreted
1e-05
1e-05
1e-05
Target_degradation_mrna
0.15996
0.15996
0.15996
Target_concentration_dna
0.0807
0.0807
0.0807
Target_concentration_M_nad_c
0.0162
0.0162
0.0162
Target_concentration_M_trnaile_c
3e-05
3e-05
3e-05
Target_concentration_M_trnahis_c
1e-05
1e-05
1e-05
Target_concentration_M_trnapro_c
2e-05
2e-05
2e-05
Target_concentration_M_trnaleu_c
4e-05
4e-05
4e-05
Target_concentration_M_spmd_c
0.007
0.007
0.007
Target_concentration_M_trnaval_c
4e-05
4e-05
4e-05
Target_concentration_M_trnacys_c
1e-05
1e-05
1e-05
Target_concentration_M_pi_c
0.0144
0.0144
0.0144
Target_concentration_M_cmp_c
0.001
0.001
0.001
Target_concentration_M_trnaarg_c
3e-05
3e-05
3e-05
Target_concentration_M_trnamet_c
1e-05
1e-05
1e-05
Target_concentration_M_amp_c
0.0047
0.0047
0.0047
Target_concentration_M_10fthf_c
0.0004
0.0004
0.0004
Target_concentration_M_k_c
0.7063
0.7063
0.7063
Target_concentration_M_trnaala_c
5e-05
5e-05
5e-05
Target_concentration_M_ctp_c
0.0005
0.0005
0.0005
Target_concentration_M_coa_c
0.0003
0.0003
0.0003
Target_concentration_M_atp_c
0.003
0.003
0.003
Target_concentration_M_nadp_c
0.0009
0.0009
0.0009
Target_concentration_M_trnalys_c
3e-05
3e-05
3e-05
Target_concentration_M_trnathr_c
2e-05
2e-05
2e-05
Target_concentration_M_adp_c
0.0026
0.0026
0.0026
Target_concentration_M_nadph_c
0.0002
0.0002
0.0002
Target_concentration_M_trnatyr_c
1e-05
1e-05
1e-05
Target_concentration_M_trnaglu_c
2e-05
2e-05
2e-05
Target_concentration_M_trnaasp_c
2e-05
2e-05
2e-05
Target_concentration_M_gmp_c
0.0005
0.0005
0.0005
Target_concentration_M_gdp_c
0.0002
0.0002
0.0002
Target_concentration_M_trnaasn_c
2e-05
2e-05
2e-05
Target_concentration_M_cdp_c
0.0003
0.0003
0.0003
Target_concentration_M_trnaphe_c
2e-05
2e-05
2e-05
Target_concentration_M_ppi_c
0.0009
0.0009
0.0009
Target_concentration_M_trnaser_c
2e-05
2e-05
2e-05
Target_concentration_M_trnatrp_c
1e-05
1e-05
1e-05
Target_concentration_M_trnagln_c
2e-05
2e-05
2e-05
Target_concentration_M_trnagly_c
6e-05
6e-05
6e-05
Target_concentration_M_gtp_c
0.0004
0.0004
0.0004
Target_concentration_M_pe161_c
0.05415
0.05415
0.05415
Target_concentration_M_murein5px4p_p
0.01389
0.01389
0.01389
Target_concentration_M_pe160_p
0.04595
0.04595
0.04595
Target_concentration_M_btn_c
0
0
0
Target_concentration_M_udcpdp_c
6e-05
6e-05
6e-05
Target_concentration_M_kdo2lipid4_c
0.01946
0.01946
0.01946
Target_concentration_M_pe161_p
0.02106
0.02106
0.02106
Target_concentration_M_pe160_c
0.01787
0.01787
0.01787
Target_flux_R_maintenance_atp
nan
nan
nan
Showing 1 to 54 of 54 entries