Cell targets

Cell targets are biochemical variables (fluxes or concentrations) that need to remain below or above a certain threshold value to ensure a viable cell. They define constraints in the RBA model.

ID TargetGroup TargetType TargetEntity TargetParameter
Target_concentration_average_protein_Cell_inner_membrane translation_targets concentrations average_protein_Cell_inner_membrane nonenzymatic_proteins_Cell_inner_membrane
Target_concentration_average_protein_Cytoplasm translation_targets concentrations average_protein_Cytoplasm nonenzymatic_proteins_Cytoplasm
Target_concentration_average_protein_Cell_outer_membrane translation_targets concentrations average_protein_Cell_outer_membrane nonenzymatic_proteins_Cell_outer_membrane
Target_concentration_average_protein_Periplasm translation_targets concentrations average_protein_Periplasm nonenzymatic_proteins_Periplasm
Target_concentration_average_protein_Secreted translation_targets concentrations average_protein_Secreted nonenzymatic_proteins_Secreted
Target_concentration_mrna transcription_targets concentrations mrna mrna_concentration
Target_production_mrna transcription_targets production_fluxes mrna mrna_degradation_flux
Target_concentration_dna replication_targets concentrations dna dna_concentration
Target_degradation_mrna rna_degradation degradation_fluxes mrna mrna_degradation_flux
Target_concentration_M_nad_c metabolite_production concentrations M_nad_c NAD_concentration
Target_concentration_M_trnaile_c metabolite_production concentrations M_trnaile_c TRNAILE_concentration
Target_concentration_M_trnahis_c metabolite_production concentrations M_trnahis_c TRNAHIS_concentration
Target_concentration_M_trnapro_c metabolite_production concentrations M_trnapro_c TRNAPRO_concentration
Target_concentration_M_trnaleu_c metabolite_production concentrations M_trnaleu_c TRNALEU_concentration
Target_concentration_M_spmd_c metabolite_production concentrations M_spmd_c SPMD_concentration
Target_concentration_M_trnaval_c metabolite_production concentrations M_trnaval_c TRNAVAL_concentration
Target_concentration_M_trnacys_c metabolite_production concentrations M_trnacys_c TRNACYS_concentration
Target_concentration_M_pi_c metabolite_production concentrations M_pi_c Pi_concentration
Target_concentration_M_cmp_c metabolite_production concentrations M_cmp_c CMP_concentration
Target_concentration_M_trnaarg_c metabolite_production concentrations M_trnaarg_c TRNAARG_concentration
Target_concentration_M_trnamet_c metabolite_production concentrations M_trnamet_c TRNAMET_concentration
Target_concentration_M_amp_c metabolite_production concentrations M_amp_c AMP_concentration
Target_concentration_M_10fthf_c metabolite_production concentrations M_10fthf_c 10FTHF_concentration
Target_concentration_M_k_c metabolite_production concentrations M_k_c K_concentration
Target_concentration_M_trnaala_c metabolite_production concentrations M_trnaala_c TRNAALA_concentration
Target_concentration_M_ctp_c metabolite_production concentrations M_ctp_c CTP_concentration
Target_concentration_M_coa_c metabolite_production concentrations M_coa_c COA_concentration
Target_concentration_M_atp_c metabolite_production concentrations M_atp_c ATP_concentration
Target_concentration_M_nadp_c metabolite_production concentrations M_nadp_c NADP_concentration
Target_concentration_M_trnalys_c metabolite_production concentrations M_trnalys_c TRNALYS_concentration
Target_concentration_M_trnathr_c metabolite_production concentrations M_trnathr_c TRNATHR_concentration
Target_concentration_M_adp_c metabolite_production concentrations M_adp_c ADP_concentration
Target_concentration_M_nadph_c metabolite_production concentrations M_nadph_c NADPH_concentration
Target_concentration_M_trnatyr_c metabolite_production concentrations M_trnatyr_c TRNATYR_concentration
Target_concentration_M_trnaglu_c metabolite_production concentrations M_trnaglu_c TRNAGLU_concentration
Target_concentration_M_trnaasp_c metabolite_production concentrations M_trnaasp_c TRNAASP_concentration
Target_concentration_M_gmp_c metabolite_production concentrations M_gmp_c GMP_concentration
Target_concentration_M_gdp_c metabolite_production concentrations M_gdp_c GDP_concentration
Target_concentration_M_trnaasn_c metabolite_production concentrations M_trnaasn_c TRNAASN_concentration
Target_concentration_M_cdp_c metabolite_production concentrations M_cdp_c CDP_concentration
Target_concentration_M_trnaphe_c metabolite_production concentrations M_trnaphe_c TRNAPHE_concentration
Target_concentration_M_ppi_c metabolite_production concentrations M_ppi_c PPi_concentration
Target_concentration_M_trnaser_c metabolite_production concentrations M_trnaser_c TRNASER_concentration
Target_concentration_M_trnatrp_c metabolite_production concentrations M_trnatrp_c TRNATRP_concentration
Target_concentration_M_trnagln_c metabolite_production concentrations M_trnagln_c TRNAGLN_concentration
Target_concentration_M_trnagly_c metabolite_production concentrations M_trnagly_c TRNAGLY_concentration
Target_concentration_M_gtp_c metabolite_production concentrations M_gtp_c GTP_concentration
Target_concentration_M_pe161_c macrocomponent_production concentrations M_pe161_c M_pe161_c_concentration
Target_concentration_M_murein5px4p_p macrocomponent_production concentrations M_murein5px4p_p M_murein5px4p_p_concentration
Target_concentration_M_pe160_p macrocomponent_production concentrations M_pe160_p M_pe160_p_concentration
Target_concentration_M_btn_c macrocomponent_production concentrations M_btn_c M_btn_c_concentration
Target_concentration_M_udcpdp_c macrocomponent_production concentrations M_udcpdp_c M_udcpdp_c_concentration
Target_concentration_M_kdo2lipid4_c macrocomponent_production concentrations M_kdo2lipid4_c M_kdo2lipid4_c_concentration
Target_concentration_M_pe161_p macrocomponent_production concentrations M_pe161_p M_pe161_p_concentration
Target_concentration_M_pe160_c macrocomponent_production concentrations M_pe160_c M_pe160_c_concentration
Target_flux_R_maintenance_atp maintenance_atp_target reaction_fluxes R_maintenance_atp None